to setup requirements:
pip install --upgrade vfbqueryTo get term info for a term: get_term_info(ID)
e.g.
import vfbquery as vfbClass example:
vfb.get_term_info('FBbt_00003748'){
"Name": "medulla",
"Id": "FBbt_00003748",
"SuperTypes": [
"Entity",
"Class",
"Adult",
"Anatomy",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_domain",
"Visual_system"
],
"Meta": {
"Name": "[medulla](FBbt_00003748)",
"Description": "The second optic neuropil, sandwiched between the lamina and the lobula complex. It is divided into 10 layers: 1-6 make up the outer (distal) medulla, the seventh (or serpentine) layer exhibits a distinct architecture and layers 8-10 make up the inner (proximal) medulla (Ito et al., 2014).",
"Comment": "Nern et al. (2025) - doi:10.1038/s41586-025-08746-0 say distal is M1-5 and M6-7 is central medulla.",
"Types": "[anterior ectoderm derivative](FBbt_00025991); [synaptic neuropil domain](FBbt_00040007)",
"Relationships": "[develops from](RO_0002202): [medulla anlage](FBbt_00001935); [is part of](BFO_0000050): [adult optic lobe](FBbt_00003701)"
},
"Tags": [
"Adult",
"Nervous_system",
"Synaptic_neuropil_domain",
"Visual_system"
],
"Queries": [
{
"query": "ListAllAvailableImages",
"label": "List all available images of medulla",
"function": "get_instances",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Gross Types",
"type": "tags",
"order": 3
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "VFB_00102107",
"label": "[ME on JRC2018Unisex adult brain](VFB_00102107)",
"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
"thumbnail": "[](VFB_00101567,VFB_00102107)"
},
{
"id": "VFB_00101385",
"label": "[ME%28R%29 on JRC_FlyEM_Hemibrain](VFB_00101385)",
"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
"thumbnail": "[ on JRC_FlyEM_Hemibrain aligned to JRC_FlyEM_Hemibrain')](VFB_00101384,VFB_00101385)"
},
{
"id": "VFB_00030810",
"label": "[medulla on adult brain template Ito2014](VFB_00030810)",
"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
"thumbnail": "[](VFB_00030786,VFB_00030810)"
},
{
"id": "VFB_00030624",
"label": "[medulla on adult brain template JFRC2](VFB_00030624)",
"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
"thumbnail": "[](VFB_00017894,VFB_00030624)"
}
]
},
"output_format": "table",
"count": 4
}
],
"IsIndividual": false,
"IsClass": true,
"Examples": {
"VFB_00101384": [
{
"id": "VFB_00101385",
"label": "ME(R) on JRC_FlyEM_Hemibrain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume_man.obj"
}
],
"VFB_00101567": [
{
"id": "VFB_00102107",
"label": "ME on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume_man.obj"
}
],
"VFB_00017894": [
{
"id": "VFB_00030624",
"label": "medulla on adult brain template JFRC2",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume_man.obj"
}
],
"VFB_00030786": [
{
"id": "VFB_00030810",
"label": "medulla on adult brain template Ito2014",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume_man.obj"
}
]
},
"IsTemplate": false,
"Synonyms": [
{
"label": "ME",
"scope": "has_exact_synonym",
"type": "",
"publication": "[Ito et al., 2014](FBrf0224194)"
},
{
"label": "Med",
"scope": "has_exact_synonym",
"type": "",
"publication": "[Chiang et al., 2011](FBrf0212704)"
},
{
"label": "optic medulla",
"scope": "has_exact_synonym",
"type": "",
"publication": "[Venkatesh and Shyamala, 2010](FBrf0212889)"
},
{
"label": "m",
"scope": "has_related_synonym",
"type": "",
"publication": ""
}
]
}Individual example:
vfb.get_term_info('VFB_00000001'){
"Name": "fru-M-200266",
"Id": "VFB_00000001",
"SuperTypes": [
"Entity",
"Individual",
"VFB",
"Neuron",
"Adult",
"Anatomy",
"Cell",
"Expression_pattern_fragment",
"Nervous_system",
"has_image",
"lineage_CM3",
"lineage_DM6",
"FlyCircuit",
"NBLAST"
],
"Meta": {
"Name": "[fru-M-200266](VFB_00000001)",
"Description": "",
"Comment": "OutAge: Adult 5~15 days",
"Types": "[adult DM6 lineage neuron](FBbt_00050144); [expression pattern fragment](VFBext_0000004)",
"Relationships": "[expresses](RO_0002292): [Scer\\GAL4%5Bfru.P1.D%5D](FBal0276838); [is part of](BFO_0000050): [Scer\\GAL4%5Bfru.P1.D%5D expression pattern](VFBexp_FBal0276838), [adult brain](FBbt_00003624), [male organism](FBbt_00007004); [overlaps](RO_0002131): [adult antennal lobe](FBbt_00007401), [adult crepine](FBbt_00045037), [adult lateral accessory lobe](FBbt_00003681), [superior posterior slope](FBbt_00045040), [vest](FBbt_00040041)"
},
"Tags": [
"Adult",
"Expression_pattern_fragment",
"Neuron",
"lineage_CM3"
],
"Queries": [
{
"query": "SimilarMorphologyTo",
"label": "Find similar neurons to fru-M-200266",
"function": "get_similar_neurons",
"takes": {
"short_form": {
"$and": [
"Individual",
"Neuron"
]
},
"default": {
"neuron": "VFB_00000001",
"similarity_score": "NBLAST_score"
}
},
"preview": 5,
"preview_columns": [
"id",
"score",
"name",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"score": {
"title": "Score",
"type": "numeric",
"order": 1,
"sort": {
"0": "Desc"
}
},
"name": {
"title": "Name",
"type": "markdown",
"order": 1,
"sort": {
"1": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "VFB_00000333",
"score": "0.61",
"name": "[fru-M-000204](VFB_00000333)",
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
"thumbnail": "[](VFB_00017894,VFB_00000333)"
},
{
"id": "VFB_00000333",
"score": "0.61",
"name": "[fru-M-000204](VFB_00000333)",
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
"thumbnail": "[](VFB_00101567,VFB_00000333)"
},
{
"id": "VFB_00002439",
"score": "0.6",
"name": "[fru-M-900020](VFB_00002439)",
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
"thumbnail": "[](VFB_00101567,VFB_00002439)"
},
{
"id": "VFB_00002439",
"score": "0.6",
"name": "[fru-M-900020](VFB_00002439)",
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
"thumbnail": "[](VFB_00017894,VFB_00002439)"
},
{
"id": "VFB_00000845",
"score": "0.59",
"name": "[fru-M-100191](VFB_00000845)",
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
"thumbnail": "[](VFB_00101567,VFB_00000845)"
}
]
},
"output_format": "table",
"count": 60
}
],
"IsIndividual": True,
"Images": {
"VFB_00017894": [
{
"id": "VFB_00000001",
"label": "fru-M-200266",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.obj",
"swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.swc"
}
],
"VFB_00101567": [
{
"id": "VFB_00000001",
"label": "fru-M-200266",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.obj",
"swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.swc"
}
]
},
"IsClass": False,
"IsTemplate": False,
"Licenses": {
"0": {
"iri": "http://virtualflybrain.org/reports/VFBlicense_FlyCircuit_License",
"short_form": "VFBlicense_FlyCircuit_License",
"label": "FlyCircuit License",
"icon": "",
"source": "FlyCircuit 1.0 - single neurons (Chiang2010)",
"source_iri": "http://virtualflybrain.org/reports/Chiang2010"
}
}
}Template example:
vfb.get_term_info('VFB_00101567'){
"Name": "JRC2018U",
"Id": "VFB_00101567",
"SuperTypes": [
"Entity",
"Individual",
"VFB",
"Adult",
"Anatomy",
"Nervous_system",
"Template",
"has_image"
],
"Meta": {
"Name": "[JRC2018Unisex](VFB_00101567)",
"Symbol": "[JRC2018U](VFB_00101567)",
"Description": "Janelia 2018 unisex, averaged adult brain template",
"Comment": "",
"Types": "[adult brain](FBbt_00003624)"
},
"Tags": [
"Adult",
"Nervous_system"
],
"Queries": [],
"IsIndividual": True,
"Images": {
"VFB_00101567": [
{
"id": "VFB_00101567",
"label": "JRC2018Unisex",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume_man.obj",
"index": 0,
"center": {
"X": 605.0,
"Y": 283.0,
"Z": 87.0
},
"extent": {
"X": 1211.0,
"Y": 567.0,
"Z": 175.0
},
"voxel": {
"X": 0.5189161,
"Y": 0.5189161,
"Z": 1.0
},
"orientation": "LPS"
}
]
},
"IsClass": False,
"Examples": {},
"IsTemplate": True,
"Domains": {
"0": {
"id": "VFB_00101567",
"label": "JRC2018U",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume_man.obj",
"index": 0,
"type_label": "adult brain",
"type_id": "FBbt_00003624"
},
"3": {
"id": "VFB_00102107",
"label": "ME on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume_man.obj",
"index": 3,
"type_label": "medulla",
"type_id": "FBbt_00003748"
},
"4": {
"id": "VFB_00102108",
"label": "AME on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/volume_man.obj",
"index": 4,
"type_label": "accessory medulla",
"type_id": "FBbt_00045003"
},
"5": {
"id": "VFB_00102109",
"label": "LO on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/volume_man.obj",
"index": 5,
"type_label": "lobula",
"type_id": "FBbt_00003852"
},
"6": {
"id": "VFB_00102110",
"label": "LOP on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/volume_man.obj",
"index": 6,
"type_label": "lobula plate",
"type_id": "FBbt_00003885"
},
"7": {
"id": "VFB_00102114",
"label": "CA on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/volume_man.obj",
"index": 7,
"type_label": "calyx of adult mushroom body",
"type_id": "FBbt_00007385"
},
"10": {
"id": "VFB_00102118",
"label": "PED on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/volume_man.obj",
"index": 10,
"type_label": "pedunculus of adult mushroom body",
"type_id": "FBbt_00007453"
},
"11": {
"id": "VFB_00102119",
"label": "aL on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/volume_man.obj",
"index": 11,
"type_label": "adult mushroom body alpha-lobe",
"type_id": "FBbt_00110657"
},
"12": {
"id": "VFB_00102121",
"label": "a\\'L on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/volume_man.obj",
"index": 12,
"type_label": "adult mushroom body alpha'-lobe",
"type_id": "FBbt_00013691"
},
"13": {
"id": "VFB_00102123",
"label": "bL on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/volume_man.obj",
"index": 13,
"type_label": "adult mushroom body beta-lobe",
"type_id": "FBbt_00110658"
},
"14": {
"id": "VFB_00102124",
"label": "b\\'L on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2124/VFB_00101567/thumbnail.png",
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