WopMars: Workflow Python Manager for Reproducible Science
WopMars is a database-driven workflow manager written in python similar to GNU Makefile or Snakemake. The difference is that the definition file of WopMars takes into account input/output SQLITE table defined as python paths to SQLAlchemy models.
You can install the latest WopMars version via "pypi":
pip install wopmarsRun a quick example:
wopmars example
cd example
pip install -e .
wopmars -D sqlite:///db.sqlite -w Wopfile.yml -vIf there were not errors, you can look at the content of the sqlite db.
$ sqlite3 db.sqlite '.tables'
Piece wom_TableInputOutputInformation
PieceCar wom_TableModificationTime
wom_Execution wom_ToolWrapper
wom_FileInputOutputInformation wom_TypeInputOrOutput
wom_Option
$ sqlite3 db.sqlite "select * from Piece limit 5"
1|UC8T9P7D0F|wheel|664.24
2|2BPN653B9D|engine|550.49
3|T808AHY3DS|engine|672.09
4|977FPG7QJZ|bodywork|667.23
5|KJ6WPB3N56|engine|678.83The WopMars documentation with user guide and API reference is hosted at Read The Docs.
