ysfitsutilpy
Convenience utilities made by ysBach especially for dealing FITS files in astronomical sciences.
Why "ys"fitsutilpy? The name "fitsutilpy" is too general, and I believe a better package should take that name, so I decided not to occupy the name. I see many useless packages that preoccupy meaningful names...
Install by
$ cd <where you want to download this package>
$ git clone https://github.com/ysBach/ysfitsutilpy
$ cd ysfitsutilpy
$ git pull && pip install -e .
From the second time, just run the last line.
This package is made to be used for
- Preprocessing (= bias, dark, and flat) of imaging data (not tested for spectroscopy yet)
- Simple analysis of FITS files by making summary csv file, getting statistics (
misc.give_stats), etc. - Educational purpose
- ...
Although I tried to make some functions as general as possible, this package as a whole is not designed for very general use, e.g., MEF (multi-extension FITS) and radio data, for instance. MEF is somewhat treatable in current version, but not satisfactorily yet.
You may import using import ysfitsutilpy as yfu.
An example usage to make a summary file of FITS files:
import ysfitsutilpy as yfu
summary = yfu.make_summary(
"observation_2018-01-01/R*.fits",
keywords=["DATE-OBS", "FILTER", "OBJECT"], # header keywords; actually it is case-insensitive
fname_option='name', # 'file' column will contain only the name of the file (not full path)
sort_by="DATE-OBS", # 'file' column will be sorted based on "DATE-OBS" value in the header
output="summary_2018-01-01.csv",
)
summary
# shows results of the summary CSV file.A simple example to combine multiple images:
import ysfitsutilpy as yfu
comb = yfu.imcombine(
"observation_2018-01-01/R*M101*.fits",
combine="med", # med, median | avg, mean, average | sum
reject="sc", # sc, sigc, sigclip, ... | ccd, ccdc, ccdclip
sigma=[2, 2], # default is [3., 3.]
offset="wcs", # combine by integer shift based on WCS information in headers
output="combined.fits",
output_err="comb_err.fits", # errormap of survived pixels
output_mask="comb_mask.fits", # N+1-dimensional mask of the rejected pixel positions
output_nrej="comb_nrej.fits", # number of pixels rejected in the output file.
output_low="comb_low.fits", # the lower limit used in pixel value rejection
output_upp="comb_upp.fits", # the upper limit used in pixel value rejection
output_rejcode="comb_rejcode.fits", # represents what rejection has happened (see docstring)
full=True,
verbose=True
)A quick dark combine:
import ysfitsutilpy as yfu
# Say dark frames have header OBJECT = "calib" && "IMAGE-TYP" = "DARK"
comb = yfu.group_combine(
"observation_2018-01-01/*DARK*.fits",
type_key=["OBJECT", "IMAGE-TYP"],
type_val=["calib", "DARK"],
group_key=["FILTER", "EXPTIME"],
fmt="dark_{:s}_{:.1f}sec.fits", # output file name format
outdir="cal-dark" # output directory (will automatically be made if not exist)
)
