ACDC: Analysis of Congruent Diversification Classes
A package for investigating and visualizing the congruence class (Louca & Pennell 2020) of a phylogenetic birth-death model.
The stable version can be installed from CRAN:
The developmental version can be installed from the github repository. The package
devtools makes this convenient:
install.packages("devtools") library(devtools) install_github("afmagee/ACDC")
There is documentation for each function in R (type
?ACDC in the R-console), as well as a long-form vignette with an example workflow.
- Louca, S., & Pennell, M. W. (2020). Extant timetrees are consistent with a myriad of diversification histories. Nature, 580(7804), 502-505.