tileHMM

Hidden Markov Models for ChIP-on-Chip Analysis


Licenses
CNRI-Python-GPL-Compatible/CNRI-Python-GPL-Compatible

Documentation

tileHMM Build Status CRAN_Status_Badge

Methods and classes to build HMMs that are suitable for the analysis of ChIP-chip data. The provided parameter estimation methods include the Baum-Welch algorithm and Viterbi training as well as a combination of both.

Releases for this R package are available from CRAN. The source code is hosted on GitHub