The BIDSit project is a toolbox to organize MRI data into BIDS format written in Python.

Install BIDSit and its core dependencies via pip:

pip install BIDSit

Or install BIDSit by cloning GitHub, then move to where the toolbox is housed in terminal :

cd path/to/BIDSit

Then run setup.py to install dependencies :

Python3 setup.py install

All of the core dependencies of BIDSit will be installed by pip.

BIDSit requires dcm2niiX to convert the DICOM and PAR/REC files to NIfTI files. dcm2niiX can be downloaded from as part of MRIcroGL’s graphical interface from https://www.nitrc.org/plugins/mwiki/index.php/dcm2nii:MainPage#Download