The BIDSit
project is a toolbox to organize MRI data into BIDS format written in Python.
Install BIDSit
and its core dependencies via pip:
pip install BIDSit
Or install BIDSit
by cloning GitHub, then move to where the toolbox is housed in terminal :
cd path/to/BIDSit
Then run setup.py
to install dependencies :
Python3 setup.py install
All of the core dependencies of BIDSit
will be installed by pip
.
BIDSit
requires dcm2niiX
to convert the DICOM and PAR/REC files to NIfTI files. dcm2niiX
can be downloaded from as part of MRIcroGL’s graphical interface from https://www.nitrc.org/plugins/mwiki/index.php/dcm2nii:MainPage#Download