A python command-line utility for the generation of comprehensive reports on the quality of ribosome profiling (Ribo-Seq) datasets

• Free software: MIT license
• Documentation: https://RiboMetric.readthedocs.io.

To install RiboMetric:

$ pip install RiboMetric

Create annotation files from gff files:

$ RiboMetric preprare -g gff_file.gff

Use the annotation file to run RiboMetric on a bam file:

$ RiboMetric run -b bam_file.bam -a annotation_RiboMetric.tsv

For more information on how to use RiboMetric, see the documentation or use --help

There are a number of limitations to running RiboMetric at the moment. These include:

• Transciptomic alignments are required in BAM format
• GFF annotations from Ensembl are also requried

This project was worked on by Lukas Wierdsma during his Internship at the UCC for Bioinformatics, Howest in 2023.

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.