Modules used throughout the tools developed and maintained by the Center for Genomic Epidemiology (CGE).


License
Apache-2.0
Install
pip install cgecore==2.0.1

Documentation

cge_core_module

Core module for the Center for Genomic Epidemiology

This module contains classes and functions needed to run the service wrappers and pipeline scripts

The pypi project can be found here: https://pypi.org/project/cgecore/

How to update:

  1. Make changes to the modules
  2. Bump the version number accordingly in cgecore/init.py
  3. Install package locally
  4. Test the changes locally (for both python2 and python3)
  5. Distribute to Pypi

Install package locally

python2 setup.py install

python3 setup.py install

Distribute to PyPi

python3 setup.py sdist bdist_wheel

twine upload dist/*

deprecated: python setup.py sdist upload -r pypi