Visualise exons and their reading frames


License
AGPL-3.0
Install
pip install exonviz==0.2.9

Documentation

Continous integration Code style: black Checked with mypy Documentation Status Last commit Release PyPI Commits since latest release

Exonviz

ExonViz is a simple tool to generate and draw transcripts that include coding and non-coding regions. All exons are to scale and the reading frames of the exons are visible. Single or multiple variants along the transcript can be drawn and will automatically be shown in the correct location.

Online version

You can try out ExonViz online at exonviz.rnatherapy.nl.

Installation

ExonViz only requires Python, and can be installed using PIP:

pip install exonviz

Usage

Simply supply either a transcript (with version!), or a valid HGVS description to exonviz to generate a figure:

exonviz --transcript "NM_003002.4:r.[274G>T;300del]" > SHDH.svg

Figure for SHDH

Documentation

The documentation for ExonViz is available on Readthedocs, including some examples of what is possible using the command line version of ExonViz.