kipoi_interpret
Model interepretation plugin for Kipoi.
Installation
pip install kipoi_interpretUsage example
# list all available methods
kipoi_interpret.importance_scores.available_methods()Available methods:
# Gradient-based methods
from kipoi_interpret.importance_scores.gradient import Gradient, GradientXInput
# In-silico mutagenesis-based methods
from kipoi_interpret.importance_scores.ism import Mutation
# DeepLift
from kipoi_interpret.importance_scores.referencebased import DeepLiftGradient * input example
# seqa = one-hot-encoded DNA sequence
import kipoi
model = kipoi.get_model("<my-model>")
ginp = GradientXInput(model)
val = ginp.score(batch_input) # val is an array of importance scoresSee notebooks/1-DNA-seq-model-example.ipynb for an example.
Release History
- 0.1.0
- First release to PyPI
