Lactolyse

Development

This project requires Docker for running analysis and dependencies. If you are not familiar with it, follow the official tutorial.

To install the package in the development (editable) mode, first clone the repository:

$ git@github.com:dblenkus/lactolyse.git
$ cd lactolyse

You should create and activate a fresh virtual environment for this project:

$ python3 -m venv --prompt lactolyse .venv
$ source .venv/bin/activate

And then install it with pip:

$ python -m pip install -e .

Test project is in the tests directory, so you should run the rest of commands in there:

$ cd tests

First start Docker containers for PostgreSQL and Redis services:

$ docker-compose up -d

Then, if you are setting up the environment for the first time, prepare the database:

$ ./manage.py migrate
$ ./manage.py createsuperuser

And finally run the development server and background worker (in two separate terminals):

$ ./manage.py runserver
$ ./manage.py runworker lactolyse.runanalysis