magcluster
Magnetosome gene cluster annotation, screening and mapping tool
Installation
We recommend creating a new environment for the magcluster release being installed through conda.
wget https://github.com/RunJiaJi/magcluster/releases/download/0.0.7/magcluster-0.0.7.yml
conda env create -n magcluster --file magcluster-0.0.7.yml
# OPTIONAL CLEANUP
rm magcluster-0.0.7.yml
General Usage
Magnetosome gene annotation:
magcluster maga XXX.fa
Magnetosome gene screen:
magcluster magsc XXX.faa XXX.gbk
Magnetosome gene cluster mapping:
magcluster magm XXX_clean.gbk