A collection of widgets intended to serve any person seeking to process microscopy images from start to finish. The wide breadth of this plugin's scope is only made possible by the amazing libraries and plugins from the napari community.
https://timmonko.github.io/napari-ndev/
napari-ndev is a pure Python package, and can be installed with pip:
pip install napari-ndevThe easiest way to get started with napari-ndev is to install all the optional dependencies (see note below) with:
pip install napari-ndev[all]napari-ndev is most useful when interacting with some other napari plugins (e.g. napari-assistant) and can read additional filetypes (e.g. bioio-nd2). You may install these BSD-3 compatible plugins with pip:
pip install napari-ndev[extras]napari-ndev can optionally use GPL-3 licensed libraries to enhance its functionality, but are not required. If you choose to install and use these optional dependencies, you must comply with the GPL-3 license terms. The main functional improvement is from napari-bioio to properly handle metadata with the Image Utilities widget, but also adds support for czi and lif files. These libraries can be installed with pip:
pip install napari-ndev[gpl-extras]
or
pip install napari-ndev[all]In addition, you may need to install specific bioio readers to support your specific image, such as bioio-czi and bioio-lif (included in [gpl-extras]) or bioio-bioformats.
For development use the [dev] optional libraries. You may also like to install [docs] and [testing] to verify your changes. However, tox will test any pull requests. You can also install [dev-all] to get all three of these dev dependencies.
This napari plugin was generated with Cookiecutter using napari's cookiecutter-napari-plugin template.
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
Distributed under the terms of the BSD-3 license, "napari-ndev" is free and open source software.
Some optional libraries can be installed to add functionality to napari-ndev, including some that may be more restrictive than this package's BSD-3-Clause.
If you encounter any problems, please [file an issue] along with a detailed description.
