perGENIE is a Web/CUI application for
personal genome interpretation. This repository contains
the core utils of perGENIE, such as Disease Risk Report
.
Quick Start (For non-developers)
Without installation, just download this repository and run:
$ python ./pergenie [command] [options]
Usage Examples
To run Disease Risk Report
:
$ python ./pergenie riskreport -I example/vcf_whole_genome.vcf \
-F vcf_whole_genome \
-P Asian
For developpers
How to Install
If you are familier with pip:
$ pip install pergenie
Or clone this repository, then, install by setup script:
$ python setup.py install
How to run test
$ python setup.py test
License
Copyright (c) 2012,2013,2014,2015 perGENIE Team <knmkr3gma[at]gmail.com>
perGENIE is licensed under the GNU AGPLv3.0.