phc-notebook-tools
Run a notebook as a workflow.
Development
Install PDM and then do
$ pdm install
Running
To run the development version from the root of the source directory do this:
$ cd sandbox
$ python ../phcnb workflow test.ipynb > output.cwl
$ pdm run cwltool --no-read-only --no-match-user output.cwl inputs.yml
The results will be written to output.ipynb
and output.txt
.