physiopy

Metapackage for physiopy packages


Keywords
bids, physiological-signals, physiology, python3-library
License
Apache-2.0
Install
pip install physiopy==0.0.1b0

Documentation

DOI

phys2bids

Phys2bids is a python3 library meant to format physiological files in BIDS. It was born for Acqknowledge files (BIOPAC), and at the moment it supports .acq files as well as .txt files obtained by labchart (ADInstruments). It doesn't support physiological files recorded with the MRI, as you can find a software for it here.

It requires python 3.6 or above, as well as the modules:

  • numpy >= 1.9.3
  • pandas >= 0.10
  • matplotlib >= 3.1.1

In order to process .acq files, it needs bioread, an excellent module that can be found at this link.

The project is currently under development. Any suggestion/bug report is welcome! Feel free to open an issue.

At the very moment, it assumes all the extracted channels from a file have the same sampling freq.