pipemake

Pipemake: A pipeline creation tool using Snakemake


License
MIT
Install
pip install pipemake==0.9.0

Documentation

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Pipemake

Pipemake is a lightweight, flexible, and easy-to-use tool for creating and managing Snakemake pipelines. It was designed with two primary goals:

  1. Provide a collection of pre-built and easy to modify bioinformatic pipelines with an enphasis on genomics and social behavior analysis
  2. Provide a user-friendly interface for creating and managing pipelines with minimal programming experience

Getting Pipemake

Mamba

conda install -n base -c conda-forge mamba
mamba create -c conda-forge -c bioconda -c kocherlab -n pipemake pipemake

Issues

  1. Check the docs.
  2. Search the issues on GitHub or open a new one.

License

Pipemake is licensed under the MIT license. See the LICENSE file for details.