pyTMT v0.5.0

pyTMT returns ms2 tandem mass tag quantification values from Crux/Percolator output.

See the Documentations for more information.

Getting Started

Requirements

Install Python 3.7+ and pip. See instructions on Python website for specific instructions for your operating system.

Install pyTMT from PyPI. We recommend using a virtual environment.

$ pip install pytmt

Running

Launch pyTMT as a Python module (Usage/Help)

$ python -m pytmt -h

Console entry point:

$ pytmt

Prerequisites

pyTMT is tested in Python 3.7, and 3.8 and requires the following packages:

pandas>=1.0.4
pymzml==2.5.2
tqdm>=4.46.0
scipy>=1.4.1

Contributing

Please contact us if you wish to contribute, and submit pull requests to us.

Authors

• Edward Lau, PhD - Code/design - ed-lau
• Maggie Lam, PhD - Code/design - Maggie-Lam

License

This project is licensed under the MIT License - see the LICENSE file for details