Tools for easy parsing of Fastq and GTF files in python

Installation:

pip3 install scsequtil

Fastq:

scsequtil.fastq.Reader

scsequtil.fastq.Record

Gtf:

scsequtil.gtf.Reader

scsequtil.gtf.Record

Convenience Functions:

1. Printing pandas tables to pdf: scsequtil.table.print_pdf
2. Plotting multiple identical figures, one per axis: scsequtil.plot.grid.AxesGrid
3. Plotting scatterplots with categorical (scsequtil.plot.scatter.categorical) or continuous (scsequtil.plot.scatter.continuous) feature coloring

Under Development

1. Package to automate spawning of sharedmemory enabled process pools
2. Package to automate spawning of multiple processes to execute a bash command containing pipes.