Tools for easy parsing of Fastq and GTF files in python
Installation:
pip3 install scsequtil
Fastq:
scsequtil.fastq.Reader
scsequtil.fastq.Record
Gtf:
scsequtil.gtf.Reader
scsequtil.gtf.Record
Convenience Functions:
- Printing pandas tables to pdf:
scsequtil.table.print_pdf
- Plotting multiple identical figures, one per axis:
scsequtil.plot.grid.AxesGrid
- Plotting scatterplots with categorical (
scsequtil.plot.scatter.categorical
) or continuous (scsequtil.plot.scatter.continuous
) feature coloring
Under Development
- Package to automate spawning of sharedmemory enabled process pools
- Package to automate spawning of multiple processes to execute a bash command containing pipes.