toil_say
Make a cow say something:
$ toil_say jobstore --message "Juno is great!"
________________
< Juno is great! >
----------------
\ ^__^
\ (oo)\_______
(__)\ )\/\
||----w |
|| ||
Usage
This package uses docker to manage its dependencies, there are 2 ways of using it:
-
Running the container in single machine mode without
--batchSystem
support:# using docker docker run -it papaemmelab/toil_say --help # using singularity singularity run docker://papaemmelab/toil_say --help
-
Installing the python package from pypi and passing the container as a flag:
# install package pip install toil_say # run with docker toil_say [TOIL-OPTIONS] [PIPELINE-OPTIONS] --docker papaemmelab/toil_say --volumes <local path> <container path> --batchSystem LSF # run with singularity toil_say [TOIL-OPTIONS] [PIPELINE-OPTIONS] --singularity docker://papaemmelab/toil_say --volumes <local path> <container path> --batchSystem LSF
See docker2singularity if you want to use a singularity image instead of using the docker://
prefix.
Contributing
Contributions are welcome, and they are greatly appreciated, check our contributing guidelines!
Credits
This package was created using Cookiecutter and the papaemmelab/cookiecutter-toil project template.