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uta-align
Release 0.3.0

C-based sequence alignment for Python

Homepage PyPI Cython

Keywords: bioinformatics, sequence-alignment, sequences
License: Other
Install: pip install uta-align==0.3.0

Documentation

uta-align provides C-based Needleman-Wunsch and Smith-Waterman alignment algorithms with a Python interface.

Dependencies: 3
Dependent packages: 0
Dependent repositories: 0
Total releases: 22
Latest release: Mar 19, 2024
First release: Dec 25, 2014
Stars: 5
Forks: 6
Watchers: 3
Contributors: 2
Repository size: 350 KB
SourceRank: 6

Releases

0.0.1dev-ce663dc8bba6: Dec 15, 2021
0.1.1: Dec 15, 2021
0.3.0: Mar 19, 2024
0.3.0a5: Mar 19, 2024
0.3.0a4: Mar 4, 2024
0.3.0a0: Mar 4, 2024
0.2.0: Mar 21, 2020
0.2.0a3: Mar 21, 2020
0.2.0a2: Mar 21, 2020
0.2.0a1: Mar 4, 2020

See all 22 releases

Contributors

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Dependencies

coloredlogs: ~=15.0
pysam: ~=0.22
pyyaml: ~=6.0

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Extra == "dev" Dependencies

black: ~=22.3
build: ~=0.8
flake8: ~=4.0
ipython: ~=8.4
isort: ~=5.10
pre-commit: ~=3.4
pylint: ~=2.14
pytest: ~=7.1
pytest-cov: ~=4.1
pytest-optional-tests: *
setuptools_scm: ~=8.0
twine: ~=5.0
wheel: ~=0.42

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Extra == "docs" Dependencies

mkdocs: *

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