vfdbQuery
Requirements
- Python 3.6
- ncbi-blast+ (makeblastdb and blastn must be in your $PATH)
Installation
pip install vfdbQuery
Usage
Usage: vfdbQuery [OPTIONS]
vfdbQuery is a simple script for querying an input genome assembly against
the Virulence Factor Database (VFDB).
Options:
-i, --infile PATH FASTA file that you want to search against VFDB
[required]
-db, --database PATH Path to Virulence Factor Database (VFDB) [required]
--help Show this message and exit.