Analyzing microbiome abundance data to infer deep structures


Keywords
microbiome, decision, trees, machine, learning, computational, biology
License
MIT-feh
Install
pip install qbiome==0.0.62

Documentation

Qbiome

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Info

Draft link will be posted here

Author

ZeD@UChicago <zed.uchicago.edu>

Description

Application of quasinets (https://pypi.org/project/quasinet/) for microbiome analysis for learning rules of organization, maturation, competition and succession in microbiome ecosystems.

Documentation

https://zeroknowledgediscovery.github.io/qbiome/qbiome/index.html

Usage:

import qbiome
from qbiome.data_formatter import DataFormatter
from qbiome.quantizer import Quantizer
from qbiome.qnet_orchestrator import QnetOrchestrator
from qbiome.forecaster import Forecaster

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