snakemake-executor-plugin-slurm-gustave-roussy

Snakemake plugin executor with special values for GUstave Roussy's Flamingo


Keywords
snakemake, plugin, executor, cluster, slurm, gustave-roussy
License
MIT
Install
pip install snakemake-executor-plugin-slurm-gustave-roussy==0.2.2

Documentation

Snakemake executor plugin: slurm-gustave-roussy

Snakemake plugin executor designed to match Gustave Roussy computing cluster specificities : automatic partition seleciton, and default resources value.

Checkout the profile given on the cluster to automatically activate this executor with your pipeline:

snakemake --profile /mnt/beegfs/pipelines/unofficial-snakemake-wrappers/profiles/slurm-web ...

For documentation, see the Snakemake plugin catalog.